After the reading of all the posts in the thread, I came back to the OP, because (unless i missed something in these three pages) this is where the real problem is:
There, here we are. It won't work… and not because you are not able to accomplish the hoped result…. you could well be, I'm not saying that.
But the rules for competitive tournaments are set by GW, and they are based on the real, unbalanced rule system AND official points system AND printed stats.
no one is and will be going to follow the harmonizer, even if it was a perfect program.
Certainly not GW, that doesn't like anyone messing with its product.
Cartainly not players, who put their effort in writing ther lists, having in mind what they can and what they cannot do, with what percentage of success… and none of them will be ready to play with warscrolls different from the ones upon which they have built their army, only because the unofficial program of a random guy says that in that way the armies will be more balanced.
It's a system that will be looked as a house rule at best, and house rules have no place in playing competitive tournaments, nor even in training for said tournaments.